@prefix this: <https://w3id.org/np/RA5S0qAe-XO3Q0_rkMRZHGT82g7yjay_AHnQFR1K-87_4> .
@prefix sub: <https://w3id.org/np/RA5S0qAe-XO3Q0_rkMRZHGT82g7yjay_AHnQFR1K-87_4/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <http://purl.obolibrary.org/obo/NCIT_C25662> rdfs:label "sampling" .
  
  <http://purl.obolibrary.org/obo/NCIT_C43376> rdfs:label "Biologically-Derived Material" .
  
  <http://www.molmod.info/semantics/pims-ii.ttl#Intention> rdfs:label "an intention" .
  
  rdf:type rdfs:label "is an instance of" .
  
  <http://www.w3.org/2003/01/geo/wgs84_pos#location> rdfs:label "has the location" .
  
  <http://www.w3.org/ns/dcat#temporalEndDate> rdfs:label "has the end date" .
  
  <http://www.w3.org/ns/dcat#temporalStartDate> rdfs:label "has the start date" .
  
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation" .
  
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .
  
  <https://w3id.org/biolink/vocab/timepoint> rdfs:label "has the timepoint" .
  
  sub:assertion a nt:AssertionTemplate, nt:UnlistedTemplate;
    dct:description "Declares the intention to collect a sample consisting of biological material or containing biological material of some sort for a specific purpose.";
    rdfs:label "Declaring intention to sample biological material";
    nt:hasStatement sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06, sub:st07,
      sub:st08, sub:st09, sub:st10, sub:st13, sub:st14, sub:st15, sub:st16;
    nt:hasTag "naturalProducts" .
  
  sub:association a nt:IntroducedResource, nt:LocalResource .
  
  sub:endDate a nt:LiteralPlaceholder;
    nt:hasDatatype xsd:date .
  
  sub:environmentMaterial a nt:GuidedChoicePlaceholder;
    rdfs:label "specify the type of environmental sample (ENVO ontology)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&q=" .
  
  sub:location a nt:ExternalUriPlaceholder;
    rdfs:label "GeoNames location ID (e.g. https://sws.geonames.org/2761367/ for Vienna, Austria)";
    nt:hasRegex "https://sws\\.geonames\\.org/[0-9]+/" .
  
  sub:permit a nt:ValuePlaceholder;
    rdfs:label "specify the permit ID or URL" .
  
  sub:purpose a nt:GuidedChoicePlaceholder;
    rdfs:label "specify the purpose of sampling (MESH ontology)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=mesh&q=" .
  
  sub:sampling a nt:LocalResource;
    rdfs:label "sampling activity" .
  
  sub:st01 rdf:object <http://www.molmod.info/semantics/pims-ii.ttl#Intention>;
    rdf:predicate rdf:type;
    rdf:subject sub:association .
  
  sub:st02 rdf:object sub:sampling;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
    rdf:subject sub:association .
  
  sub:st03 rdf:object <http://purl.obolibrary.org/obo/NCIT_C25662>;
    rdf:predicate rdf:type;
    rdf:subject sub:sampling .
  
  sub:st04 rdf:object sub:targetMaterial;
    rdf:predicate <https://w3id.org/biolink/vocab/subject>;
    rdf:subject sub:association .
  
  sub:st05 rdf:object <http://purl.obolibrary.org/obo/NCIT_C43376>;
    rdf:predicate rdf:type;
    rdf:subject sub:targetMaterial .
  
  sub:st06 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:environmentMaterial;
    rdf:predicate rdf:type;
    rdf:subject sub:targetMaterial .
  
  sub:st07 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:tissueMaterial;
    rdf:predicate rdf:type;
    rdf:subject sub:targetMaterial .
  
  sub:st08 rdf:object sub:location;
    rdf:predicate <http://www.w3.org/2003/01/geo/wgs84_pos#location>;
    rdf:subject sub:association .
  
  sub:st09 a nt:OptionalStatement;
    rdf:object sub:timepoint;
    rdf:predicate <https://w3id.org/biolink/vocab/timepoint>;
    rdf:subject sub:association .
  
  sub:st10 a nt:RepeatableStatement;
    rdf:object sub:purpose;
    rdf:predicate <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPurpose>;
    rdf:subject sub:association .
  
  sub:st13 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:permit;
    rdf:predicate <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPermit>;
    rdf:subject sub:association .
  
  sub:st14 a nt:OptionalStatement;
    rdf:object sub:timePeriod;
    rdf:predicate <https://w3id.org/sciencelive/o/terms/coversTimePeriod>;
    rdf:subject sub:association .
  
  sub:st15 a nt:OptionalStatement;
    rdf:object sub:startDate;
    rdf:predicate <http://www.w3.org/ns/dcat#temporalStartDate>;
    rdf:subject sub:timePeriod .
  
  sub:st16 a nt:OptionalStatement;
    rdf:object sub:endDate;
    rdf:predicate <http://www.w3.org/ns/dcat#temporalEndDate>;
    rdf:subject sub:timePeriod .
  
  sub:startDate a nt:LiteralPlaceholder;
    nt:hasDatatype xsd:date .
  
  sub:targetMaterial a nt:LocalResource;
    rdfs:label "sample material" .
  
  sub:timePeriod a nt:LocalResource .
  
  sub:timepoint a nt:LiteralPlaceholder;
    rdfs:label "time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'";
    nt:hasRegex "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" .
  
  sub:tissueMaterial a nt:GuidedChoicePlaceholder;
    rdfs:label "specify the type of tissue sample (BTO ontology)";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=bto&q=" .
  
  <https://w3id.org/sciencelive/o/terms/coversTimePeriod> rdfs:label "covers time period" .
  
  <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPermit> rdfs:label "has a sampling permit" .
  
  <https://w3id.org/spaces/biodiversity/r/ontology/hasSamplingPurpose> rdfs:label "has sampling purpose" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0001-6534-6609 .
}

sub:pubinfo {
  orcid:0000-0001-6534-6609 foaf:name "Mitja M. Zdouc" .
  
  this: dct:created "2026-07-10T09:07:40.685Z"^^xsd:dateTime;
    dct:creator orcid:0000-0001-6534-6609;
    dct:license <https://creativecommons.org/publicdomain/zero/1.0/>;
    npx:embeds sub:assertion;
    npx:supersedes <https://w3id.org/np/RA8lgWQi1WrBzv5HhV2J5pdb8dzu8zp69JOogNDWADdYw>;
    npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
    rdfs:label "Declaring intention to sample biological material";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>,
      <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>, <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAhAAhrQ7o6vVphjp267_JjFBC2CxpER7NEDjLKBkX0WU/template> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAnj9AmTE2Q7RxppglmQDLGezpd8yHXSVP7AqgUhyZ36SjaTCdhOlYhCIapxtat5RBYFjIQ5OreKs7GRf29kXtKqAsBR4skDZ10RviKdb52YvZEC+r1CsqOOuMCpG8fQhIWiD53PonxeeyjL9RXWFh1n4lGQ+Bo8qhIQQKgjEHnpwOgb+rLSg1V/K0j6DDW21ScOC1w1FGn+rgf2U3f0jnr9/EL8wV6uhUsRmVyPQF5YqoYsu1e10cxoXO3A63BZFg6GYeUWBenxlSo/8ZIM0Q/mk3Rt6W46aj9srX9o6KyQotN1Hux6QkgtG6usCaQEHr0g37Ip6NMPScT/rTfu3fZwIDAQAB";
    npx:hasSignature "mqPWtsH2X1nqdvBvpKijoYTQ4LZ2Fb1eG2YMt2VMgnEon4iWY5RcxXEOWZ3H5O0T1cdM1Bd8WP0UA4mMHFDvit7KT0h/yJKYnxBnwa0KFz+de5xZv3mZX6Z0sdj9hwuxrap1sHvwJfnhhk5Gf/+DCdEopgzzCRykEFsFsvX93w0P07K1KIN+7C46GXYaRA534YBnlbsYk0TKuO0vKFNgWf7Yzl/Zgiiu7vDKui3R96Nn29fKAWhCOSBmS75QrKCTu1AnX02ZKhnub6mG61Yi9yqGXCAPV9xdUZGKlZrjrD+Qfgz4xfK4K+zS6NF4/b2dk3vGlJ5SyLuBWN7tkxYisg==";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0001-6534-6609 .
}