Nanopublication

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ID

https://w3id.org/np/RAEAFgWctPDe34HnSz94z5AMmIWPCMAF6SohmklbWGm3g

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAEAFgWctPDe34HnSz94z5AMmIWPCMAF6SohmklbWGm3g> .
@prefix sub: <https://w3id.org/np/RAEAFgWctPDe34HnSz94z5AMmIWPCMAF6SohmklbWGm3g/> .
@prefix schema: <http://schema.org/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix pav: <http://purl.org/pav/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix bibo: <http://purl.org/ontology/bibo/> .
@prefix dcat: <http://www.w3.org/ns/dcat#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix dc: <http://purl.org/dc/terms/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23TestDataset a dcat:Dataset;
    dc:source "RefSeq database"@en;
    schema:name "Test Dataset for CoxBase Validation"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23averageGenomeSize "2.01"^^xsd:decimal;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23chromosomeAssemblyCount "13"^^xsd:integer;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23completeChromosomeCount "11"^^xsd:integer;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23contigsCount "15"^^xsd:integer;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23genomeSizeUnit "Mb"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23scaffoldsCount "11"^^xsd:integer;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23sequenceCount "50"^^xsd:integer .
  
  sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23ValidationStudy a schema:ResearchProject;
    schema:description "Validation of CoxBase in silico genotyping implementation"@en;
    schema:name "CoxBase Validation Study"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23corroborationAccuracy "perfect (with one exception)"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23dataSource sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23RefSeqDatabase;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23findingsInclude sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23NovelSpacerSequences,
      sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23PlasmidTypes, sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23adaAGenePhenotypes;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23successRate "100% (except poor quality sequences)"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23testedGenomes "50"^^xsd:integer .
}

sub:provenance {
  <https://doi.org/10.1128/mSystems.00403-21> a bibo:AcademicArticle;
    bibo:doi "10.1128/mSystems.00403-21";
    schema:datePublished "2021"^^xsd:gYear;
    schema:name "CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences"@en .
  
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1481-2996, orcid:0000-0002-2498-4951,
      orcid:0000-0002-2864-3820, orcid:0000-0003-0913-194X, orcid:0000-0003-1886-7625, orcid:0000-0003-3012-2626;
    prov:wasDerivedFrom <https://doi.org/10.1128/mSystems.00403-21> .
}

sub:pubinfo {
  this: a npx:ExampleNanopub;
    dc:creator orcid:0009-0005-7752-8203;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    dc:title "CoxBase Validation Study"@en;
    npx:signedBy orcid:0009-0005-7752-8203;
    npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
    pav:authoredBy orcid:0009-0005-7752-8203;
    rdfs:comment "Nanopublication describing the CoxBase validation study and its results"@en;
    rdfs:label "CoxBase Validation Study"@en .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAoSR/rqhnkTPQO8u4l2JQAemJo5cN83rT54nA5NXHUqaeu26bEjT/rsX1PCVBhhJ3cV2uu4wjI0NfcVaKPKmODSf6p579tdOykOnjbWLbxxPMe5DC5eV1ThMHsFsNU/6vCYIfS00E7wre7fnFYz7FAG7v1MZEyWeSXsHgk9jHoqQQDPqup5PHReKp1dd6J0Nht/OfSYnUancKAgIFyPhkTlThsLK5xSNyNEgiTR7pwkP5pGq2AnD6bPw4G3kiPnIpIGZNsaeIOvhn64gwbrtoJVdoun/namw6FQ7StEC5km/0evaBZc4qIextwO/s32Wru77ukblJ0Xi/YzbC0iLuIQIDAQAB";
    npx:hasSignature "bbKMDSgS14U3EfEsar9egLIytpJ9t6t9YrUeJ3foKZ7zhoWXHpyINf3ATldIftBQLrzcgfTs1hds+TjR120xihGcSvImvj9itf78ydr6EzT3XLogmcWVGVMaOV9QryiIF3sfVy7ydPzZUvkOCLU3U2ke8I8vUqcpvInYwKmmDnvBCBahh+iqKO53hsRBXu42lClQxtA1XLvbJCUHzwo3pMVNRe9trCCE1aBQ6ZZMafEnwT4fwusP/kBcGle3nSngLAaGkmWuhIlmzca2DuLhLmmQEynMDfrjoapmLj0thFcTi0iqsA8xYr4b27bqGvFSjWqFeds5uBAO0mT7etC6TQ==";
    npx:hasSignatureTarget this: .
}