https://w3id.org/np/RAXpCVMZbU7I3oaSJ9fEDVRK9qWjPt5aZqar6e79R6mmE
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAXpCVMZbU7I3oaSJ9fEDVRK9qWjPt5aZqar6e79R6mmE> .
@prefix sub: <https://w3id.org/np/RAXpCVMZbU7I3oaSJ9fEDVRK9qWjPt5aZqar6e79R6mmE/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
sub:get-biochementity-info a <https://w3id.org/kpxl/grlc/grlc-query>;
dct:description "Key-value Info table for a biochementity (a chemical entity defined as a subclass of BioChemEntity). Finds the entity's latest defining nanopub ('partid', signed by an owning-resource member pubkey 'pubkey', not invalidated) and shows every field the biochementity template allows: the name (and its Dutch nl-be variant), alternative names, type, superclasses, metabolite/isomer relations, chemical roles, external identifiers, group labels, context-specific aliases, comment, the vocabulary it is part of, and the defining nanopub. Each property is one row with a single value cell: literal values render as text, IRI values render as links labelled by the companion column (linked entities defined on the network show their label). Multi-valued properties are collected into one cell; rows for optional fields are omitted when absent.";
dct:license <http://www.apache.org/licenses/LICENSE-2.0>;
rdfs:label "Get biochementity info";
<https://w3id.org/kpxl/grlc/endpoint> <https://w3id.org/np/l/nanopub-query-1.1/repo/full>;
<https://w3id.org/kpxl/grlc/sparql> """prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix dct: <http://purl.org/dc/terms/>
prefix schema: <http://schema.org/>
prefix skos: <http://www.w3.org/2004/02/skos/core#>
prefix owl: <http://www.w3.org/2002/07/owl#>
prefix obo: <http://purl.obolibrary.org/obo/>
prefix pehterms: <https://w3id.org/peh/terms/>
prefix np: <http://www.nanopub.org/nschema#>
prefix npa: <http://purl.org/nanopub/admin/>
prefix npx: <http://purl.org/nanopub/x/>
select ?Property_noheader ?Property_label
(group_concat(replace(str(?val), '[\\r\\n]+', ' '); separator='\\n') as ?Value_multi_val_noheader)
(group_concat(replace(str(?vallabel), '[\\r\\n]+', ' '); separator='\\n') as ?Value_label_multi)
where {
{
select ?ord ?Property_noheader ?Property_label ?val (min(?vallabelRaw) as ?vallabel) where {
{
select ?dnp ?da where {
values ?__pubkey_multi {}
graph npa:graph {
?dnp npa:hasValidSignatureForPublicKeyHash ?__pubkey_multi ;
(npx:introduces|npx:describes|npx:embeds) ?_partid_iri ;
dct:created ?ddate ;
np:hasAssertion ?da .
filter not exists { ?inv npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKeyHash ?__pubkey_multi . }
}
} order by desc(?ddate) limit 1
}
{
graph ?da { ?_partid_iri rdfs:label ?v . filter(lang(?v) = '') }
bind(1 as ?ord) bind(rdfs:label as ?Property_noheader) bind('Name:' as ?Property_label)
bind(str(?v) as ?val) bind('' as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri rdfs:label ?v . filter(lang(?v) = 'nl-be') }
bind(2 as ?ord) bind(rdfs:label as ?Property_noheader) bind('Name (Dutch):' as ?Property_label)
bind(str(?v) as ?val) bind('' as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri schema:alternateName ?v }
bind(3 as ?ord) bind(schema:alternateName as ?Property_noheader) bind('Alternative names:' as ?Property_label)
bind(if(lang(?v) = 'nl-be', concat(str(?v), ' (nl)'), str(?v)) as ?val) bind('' as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri rdf:type ?iri }
bind(4 as ?ord) bind(rdf:type as ?Property_noheader) bind('Type:' as ?Property_label)
bind(str(?iri) as ?val) bind(replace(str(?iri), '^.*[/#]', '') as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri rdfs:subClassOf ?iri }
optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
bind(5 as ?ord) bind(rdfs:subClassOf as ?Property_noheader) bind('Subclass of:' as ?Property_label)
bind(str(?iri) as ?val) bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri pehterms:isMetaboliteOf ?iri }
optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
bind(6 as ?ord) bind(pehterms:isMetaboliteOf as ?Property_noheader) bind('Is metabolite of:' as ?Property_label)
bind(str(?iri) as ?val) bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri pehterms:isIsomerOf ?iri }
optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
bind(7 as ?ord) bind(pehterms:isIsomerOf as ?Property_noheader) bind('Is isomer of:' as ?Property_label)
bind(str(?iri) as ?val) bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri obo:RO_0000087 ?iri }
bind(8 as ?ord) bind(obo:RO_0000087 as ?Property_noheader) bind('Has role:' as ?Property_label)
bind(str(?iri) as ?val) bind(replace(str(?iri), '^.*[/#]', '') as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri skos:exactMatch ?iri }
bind(9 as ?ord) bind(skos:exactMatch as ?Property_noheader) bind('External identifiers:' as ?Property_label)
bind(str(?iri) as ?val) bind(replace(str(?iri), '^.*/', '') as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri pehterms:hasGroupLabel ?v }
bind(10 as ?ord) bind(pehterms:hasGroupLabel as ?Property_noheader) bind('Group labels:' as ?Property_label)
bind(str(?v) as ?val) bind('' as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri pehterms:hasContextAlias ?ca . }
optional { graph ?da { ?ca schema:alternateName ?caName } }
optional { graph ?da { ?ca schema:identifier ?caType } }
optional { graph ?da { ?ca pehterms:hasContext ?caCtx } }
bind(11 as ?ord) bind(pehterms:hasContextAlias as ?Property_noheader) bind('Context aliases:' as ?Property_label)
bind(concat(coalesce(str(?caName), '?'), coalesce(concat(' (', str(?caType), ')'), ''), coalesce(concat(' @ ', replace(str(?caCtx), '^.*/', '')), '')) as ?val) bind('' as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri schema:comment ?v }
bind(12 as ?ord) bind(schema:comment as ?Property_noheader) bind('Comment:' as ?Property_label)
bind(str(?v) as ?val) bind('' as ?vallabelRaw)
} union {
graph ?da { ?_partid_iri dct:isPartOf ?iri }
optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
bind(13 as ?ord) bind(dct:isPartOf as ?Property_noheader) bind('Part of:' as ?Property_label)
bind(str(?iri) as ?val) bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?vallabelRaw)
}
} group by ?ord ?Property_noheader ?Property_label ?val
}
union
{
{
select ?dnp where {
values ?__pubkey_multi {}
graph npa:graph {
?dnp npa:hasValidSignatureForPublicKeyHash ?__pubkey_multi ;
(npx:introduces|npx:describes|npx:embeds) ?_partid_iri ;
dct:created ?ddate .
filter not exists { ?inv npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKeyHash ?__pubkey_multi . }
}
} order by desc(?ddate) limit 1
}
bind(14 as ?ord) bind(npa:viaNanopub as ?Property_noheader) bind('Defined in:' as ?Property_label)
bind(str(?dnp) as ?val) bind(substr(replace(str(?dnp), '^.*/np/', ''), 1, 10) as ?vallabel)
}
}
group by ?ord ?Property_noheader ?Property_label
order by ?ord""" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}
sub:pubinfo {
orcid:0000-0002-1267-0234 foaf:name "Tobias Kuhn" .
this: dct:created "2026-08-12T08:49:27Z"^^xsd:dateTime;
dct:creator orcid:0000-0002-1267-0234;
dct:license <https://creativecommons.org/licenses/by/4.0/>;
npx:embeds sub:get-biochementity-info;
npx:supersedes <https://w3id.org/np/RAOxnm178yESfuNMoQmk-xEeGNWAuhqeOpLFSUiLn3pDk>;
rdfs:label "Get biochementity info";
nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw>;
nt:wasCreatedFromTemplate <https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB";
npx:hasSignature "GZa/zE0wngTj7AcxLnWAY4rxHuIx0MoESs8qk7PyZjR2DxSwL8CeoS4L37MHUOa4FWKTjpQlrhf7NA7T8SH2lCcqtxWU+iHsXlnHNKWcnmNY1/JbSSSsUh2cZ2fV5n5quWfgfWz7PGwZ1fv2cU1Xms3oBnZyLaYlVsTRFGVimDg=";
npx:hasSignatureTarget this:;
npx:signedBy orcid:0000-0002-1267-0234 .
}