Nanopublication

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ID

https://w3id.org/np/RAaZJ0IuCVz8QaGyDWn10j8TBlpIifMDxqi7HzglNuz80

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAaZJ0IuCVz8QaGyDWn10j8TBlpIifMDxqi7HzglNuz80> .
@prefix sub: <https://w3id.org/np/RAaZJ0IuCVz8QaGyDWn10j8TBlpIifMDxqi7HzglNuz80/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix mac: <https://w3id.org/spaces/mac/r/ontology/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  this: dct:license <https://creativecommons.org/licenses/by/4.0/>;
    <https://w3id.org/fdof/ontology#hasEncodingFormat> <https://www.iana.org/assignments/media-types/application/trig>;
    <https://w3id.org/fdof/ontology#materializes> sub:Alpha-RMSD-AlphaFold2;
    <https://www.w3.org/ns/dcat#accessURL> this: .
  
  sub:Alpha-RMSD-AlphaFold2 a <https://w3id.org/fdof/ontology#FAIRDigitalObject>, mac:ComputationalPredictionRMSD;
    dct:creator orcid:0000-0001-8888-635X;
    dct:isPartOf <https://w3id.org/np/RAXPu-iuezz8swvd6RWIba3VzV0cp94Aq3pTzVst9_nPk/StayAhead-Project>;
    dct:publisher <https://ror.org/027bh9e22>;
    dct:source <https://doi.org/10.71728/hw56-vj34>, <https://sen.science/doi/10.71728/hw56-vj34/resources/af_wuhan_1step_v1>,
      <https://w3id.org/np/RAuqwhkDJgVHU8_Fk2gsMw483Iml75Kc09XKR6h0ybO3Q/STAYAHEAD-Dataset1>;
    rdfs:comment "Computational prediction of RMSD (2.277628683231952 Angstroms) for SARS-CoV-2 Spike RBD variant Alpha (N169Y) using AlphaFold 2.";
    rdfs:label "Alpha RMSD = 2.277628683231952 Å — AlphaFold 2";
    <https://w3id.org/fdof/ontology#hasMetadata> this:;
    mac:hasPredictionMethod <https://w3id.org/np/RAPz4KzBYjUUaURNGn4pR7PpJ5VAvv43v5dYK7gyG1DXk/AlphaFold2-Method>;
    mac:hasRMSD "2.277628683231952"^^xsd:decimal;
    mac:isObservationOf <https://w3id.org/np/RAngbyT2iZe4xYUcPnTnDFKDaiL5-tSmoUYzF9RK3LHdE/Alpha-RBD-Variant>;
    <https://www.w3.org/ns/dcat#contactPoint> "e.a.schultes@lacdr.leidenuniv.nl" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0001-8888-635X .
}

sub:pubinfo {
  this: dct:created "2026-06-01T10:30:42Z"^^xsd:dateTime;
    dct:creator orcid:0000-0001-8888-635X;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:introduces sub:Alpha-RMSD-AlphaFold2;
    npx:supersedes <https://w3id.org/np/RAjn5zJQoLUFSMpDLEEG6Pc_oONJNDlMnPi4grKHOsxOE>;
    rdfs:label "Alpha RMSD = 2.277628683231952 Å — AlphaFold 2";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw>,
      <https://w3id.org/np/RAMEgudZsQ1bh1fZhfYnkthqH6YSXpghSE_DEN1I-6eAI>, <https://w3id.org/np/RARW4MsFkHuwjycNElvEVtuMjpf4yWDL10-0C5l2MqqRQ>,
      <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RALJKysR8vqqqZYXPGHcsI_J0BvPFUmzwOnV9WCGvUjcY> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQD3w/IUb755GIzp3ueODYkgELhyq4Clygb5Kspge50xo+n8uC/IvXwi+ukRjEpdfX/JZ09yKUCJ2AMMr/QchrsP1Xhg9Q3fEZ4E12XqFd5jX00Qs0K5XZwjBaV8NdDTJW9I4gpcyh0cry7hSBAWHkXEkqbK+lQvR4UFAKejFq6u/wIDAQAB";
    npx:hasSignature "jm0TI7iEB2VVqYxKFPBvlqCaU8GqQvR683OokWcupgvf2ng96n9QYF+iJtnYUOj8zNG60rOhAZ1cNJO+RvrK9Q9c2R+9Z+5J4V2VRsdB792oPBOQY8+XbSCVESS6rBLXfC3XwHc3kfHWMV8KIrU0NZox47diFREVo+wjg00PKpM=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0001-8888-635X .
}