https://w3id.org/np/RAd3xrwYCOsVgn1S2Ja2knyQBcDy0BHqRIN30ChyhZkcI
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
@prefix this: <https://w3id.org/np/RAd3xrwYCOsVgn1S2Ja2knyQBcDy0BHqRIN30ChyhZkcI> .
@prefix sub: <https://w3id.org/np/RAd3xrwYCOsVgn1S2Ja2knyQBcDy0BHqRIN30ChyhZkcI/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
sub:Head {
this: a np:Nanopublication;
np:hasAssertion sub:assertion;
np:hasProvenance sub:provenance;
np:hasPublicationInfo sub:pubinfo .
}
sub:assertion {
<http://edamontology.org/format_2333> rdfs:label "Binary format" .
<http://edamontology.org/format_3464> rdfs:label "JSON" .
<http://edamontology.org/format_3508> rdfs:label "PDF" .
<http://edamontology.org/format_3590> rdfs:label "HDF5" .
<http://edamontology.org/format_3603> rdfs:label "PNG" .
<http://edamontology.org/format_3650> rdfs:label "NetCDF" .
<http://edamontology.org/format_3752> rdfs:label "CSV" .
<http://edamontology.org/format_3915> rdfs:label "Zarr" .
<http://edamontology.org/format_3997> rdfs:label "MPEG-4" .
dct:creator rdfs:label "created by" .
dct:description rdfs:label "has description" .
dct:format rdfs:label "needs or produces data format" .
dct:license rdfs:label "has license" .
dct:title rdfs:label "has title" .
prov:wasDerivedFrom rdfs:label "improves upon method" .
<https://creativecommons.org/licenses/by/4.0/> rdfs:label "CC-BY-4.0" .
<https://schema.org/applicationCategory> rdfs:label "serves purpose" .
<https://schema.org/applicationSubCategory> rdfs:label "applies to domains" .
<https://schema.org/codeRepository> rdfs:label "has source repository" .
<https://schema.org/keywords> rdfs:label "has keywords" .
<https://schema.org/learningResourceType> rdfs:label "uses computational approach" .
<https://schema.org/result> rdfs:label "reports performance results" .
<https://schema.org/url> rdfs:label "is accessible via" .
<https://spdx.org/licenses/Apache-2.0.html> rdfs:label "Apache 2.0" .
<https://spdx.org/licenses/BSD-3-Clause.html> rdfs:label "BSD 3 Clause" .
<https://spdx.org/licenses/GPL-3.0.html> rdfs:label "GPL 3.0" .
<https://spdx.org/licenses/MIT.html> rdfs:label "MIT" .
sub:applicable-domains a nt:GuidedChoicePlaceholder;
rdfs:label "applicable research domains";
nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
sub:application-category a nt:GuidedChoicePlaceholder;
rdfs:label "primary computational purpose";
nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
sub:assertion a nt:AssertionTemplate;
dct:description "Template for describing a computational workflow implemented for and supported by a Workflow Management System";
rdfs:label "Computational Workflow";
nt:hasNanopubLabelPattern "Method: ${title}";
nt:hasStatement sub:st01, sub:st02, sub:st03, sub:st04, sub:st05, sub:st06, sub:st07,
sub:st08, sub:st09, sub:st10, sub:st11, sub:st12, sub:st14, sub:st15, sub:st16, sub:st17;
nt:hasTag "Computational Workflow";
nt:hasTargetNamespace <https://www.wikidata.org/wiki/Q2808660> .
sub:base-method a nt:UriPlaceholder;
rdfs:label "method this improves upon (DOI or URI)" .
sub:computational-approach a nt:GuidedChoicePlaceholder;
rdfs:label "computational approach used";
nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
sub:computational-workflow a nt:UriPlaceholder;
rdfs:label "URI of the workflow repository" .
sub:creator a nt:UriPlaceholder;
rdfs:label "ORCID of creator";
nt:hasPrefix "https://orcid.org/";
nt:hasPrefixLabel "ORCID (just the 16-digit ID)";
nt:hasRegex "0000-\\d{4}-\\d{4}-\\d{4}" .
sub:description a nt:LongLiteralPlaceholder;
rdfs:label "description of what the method does";
nt:hasRegex "[\\s\\S]{10,1000}" .
sub:doi a nt:UriPlaceholder;
rdfs:label "DOI URL";
nt:hasPrefix "https://doi.org/";
nt:hasPrefixLabel "DOI (starting with '10.')";
nt:hasRegex "10.(\\d)+/(\\S)+" .
sub:github-repo a nt:UriPlaceholder;
rdfs:label "GitHub repository URL" .
sub:input-format a nt:RestrictedChoicePlaceholder;
rdfs:label "expected input data format";
nt:hasPrefix "input:";
nt:hasPrefixLabel "Input:";
nt:possibleValue <http://edamontology.org/format_2333>, <http://edamontology.org/format_3464>,
<http://edamontology.org/format_3590>, <http://edamontology.org/format_3591>, <http://edamontology.org/format_3620>,
<http://edamontology.org/format_3650>, <http://edamontology.org/format_3752>, <http://edamontology.org/format_3915>,
<http://edamontology.org/format_3997> .
sub:keywords a nt:GuidedChoicePlaceholder;
rdfs:label "research keywords from Wikidata";
nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
sub:license a nt:RestrictedChoicePlaceholder;
rdfs:label "software license";
nt:possibleValue <https://creativecommons.org/licenses/by/4.0/>, <https://spdx.org/licenses/Apache-2.0.html>,
<https://spdx.org/licenses/BSD-3-Clause.html>, <https://spdx.org/licenses/GPL-3.0.html>,
<https://spdx.org/licenses/MIT.html> .
sub:output-format a nt:RestrictedChoicePlaceholder;
rdfs:label "produced output format";
nt:hasPrefix "output:";
nt:hasPrefixLabel "Output:";
nt:possibleValue <http://edamontology.org/format_2333>, <http://edamontology.org/format_3464>,
<http://edamontology.org/format_3508>, <http://edamontology.org/format_3590>, <http://edamontology.org/format_3603>,
<http://edamontology.org/format_3650>, <http://edamontology.org/format_3752>, <http://edamontology.org/format_3915>,
<http://edamontology.org/format_3997> .
sub:performance-metrics a nt:LongLiteralPlaceholder;
rdfs:label "quantitative performance measurements";
nt:hasRegex "[\\s\\S]{10,1000}" .
sub:st01 rdf:object <https://schema.org/SoftwareSourceCode>;
rdf:predicate rdf:type;
rdf:subject sub:computational-workflow .
sub:st02 rdf:object sub:title;
rdf:predicate dct:title;
rdf:subject sub:computational-workflow .
sub:st03 rdf:object sub:description;
rdf:predicate dct:description;
rdf:subject sub:computational-workflow .
sub:st04 rdf:object sub:doi;
rdf:predicate <https://schema.org/url>;
rdf:subject sub:computational-workflow .
sub:st05 a nt:RepeatableStatement;
rdf:object sub:github-repo;
rdf:predicate <https://schema.org/codeRepository>;
rdf:subject sub:computational-workflow .
sub:st06 a nt:RepeatableStatement;
rdf:object sub:creator;
rdf:predicate dct:creator;
rdf:subject sub:computational-workflow .
sub:st07 rdf:object sub:workflow-management-system;
rdf:predicate <https://www.wikidata.org/wiki/Q2808660>;
rdf:subject sub:computational-workflow .
sub:st08 rdf:object sub:application-category;
rdf:predicate <https://schema.org/applicationCategory>;
rdf:subject sub:computational-workflow .
sub:st09 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:keywords;
rdf:predicate <https://schema.org/keywords>;
rdf:subject sub:computational-workflow .
sub:st10 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:input-format;
rdf:predicate dct:format;
rdf:subject sub:computational-workflow .
sub:st11 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:output-format;
rdf:predicate dct:format;
rdf:subject sub:computational-workflow .
sub:st12 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:license;
rdf:predicate dct:license;
rdf:subject sub:computational-workflow .
sub:st14 a nt:OptionalStatement;
rdf:object sub:base-method;
rdf:predicate prov:wasDerivedFrom;
rdf:subject sub:computational-workflow .
sub:st15 a nt:RepeatableStatement;
rdf:object sub:performance-metrics;
rdf:predicate <https://schema.org/result>;
rdf:subject sub:computational-workflow .
sub:st16 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:computational-approach;
rdf:predicate <https://schema.org/learningResourceType>;
rdf:subject sub:computational-workflow .
sub:st17 a nt:OptionalStatement, nt:RepeatableStatement;
rdf:object sub:applicable-domains;
rdf:predicate <https://schema.org/applicationSubCategory>;
rdf:subject sub:computational-workflow .
sub:title a nt:LiteralPlaceholder;
rdfs:label "title of the Workflow";
nt:hasRegex "[\\s\\S]{5,200}" .
sub:workflow-management-system a nt:RestrictedChoicePlaceholder;
rdfs:label "Workflow Management System", "uses workflow management system";
nt:possibleValue <https://www.wikidata.org/wiki/Q106286298>, <https://www.wikidata.org/wiki/Q51293717>,
<https://www.wikidata.org/wiki/Q5518091>, <https://www.wikidata.org/wiki/Q56291707> .
<https://www.wikidata.org/wiki/Q2808660> rdfs:label "Nextflow" .
<https://www.wikidata.org/wiki/Q51293717> rdfs:label "Snakemake" .
<https://www.wikidata.org/wiki/Q5518091> rdfs:label "Galaxy" .
<https://www.wikidata.org/wiki/Q56291707> rdfs:label "CWL" .
}
sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0003-2408-7588 .
}
sub:pubinfo {
orcid:0000-0003-2408-7588 foaf:name "Christian Meesters" .
this: dct:created "2026-02-12T10:40:10.906Z"^^xsd:dateTime;
dct:creator orcid:0000-0003-2408-7588;
dct:license <https://creativecommons.org/licenses/by/4.0/>;
npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
rdfs:label "Computational Workflow";
prov:wasDerivedFrom <https://w3id.org/np/RAZPmn81h2ShR_KHIhzaEhGIR4u2pp2mun1hblsySWvSY>;
nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw>,
<https://w3id.org/np/RAMEgudZsQ1bh1fZhfYnkthqH6YSXpghSE_DEN1I-6eAI>, <https://w3id.org/np/RARW4MsFkHuwjycNElvEVtuMjpf4yWDL10-0C5l2MqqRQ>,
<https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
nt:wasCreatedFromTemplate <https://w3id.org/np/RASDwdz5WzsWdeDRREs0i5n5xTtKTrKS8pCIFUXhlkpt0> .
sub:sig npx:hasAlgorithm "RSA";
npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQC+DVJTSCzdJUJMzlwRfb2Qm2NZpuZ932RpVliWxMAhmZ6ZkeeibmJlW/Z0q51YkFArJIWbJ0f7rLQWM5epuZV4I5cjMqepOWGey6LrPolMs8lI9dJf9zW9lJsneV+py3U8WsrB6mg//pkEeXnVDd+WscADyXJ5EeLwoZjCkPn8/QIDAQAB";
npx:hasSignature "f8qAKnYwItPeGx49corzTJwMQAjqMnIust4WUfe98lnEQNii4uPUVzNx5dXzUheY9MlUgiGqvhMmxzwaCck0Lqy+Z/2X/yHFGug8f1iAlV069cqb1BANv2+qTjlQL2qhctR3nrFMdqudwLLuPtcf66ohdIMh/aiUyvaSRG6juSg=";
npx:hasSignatureTarget this:;
npx:signedBy orcid:0000-0003-2408-7588 .
}