@prefix this: <https://w3id.org/np/RAeCxjIx0rgSY9AdOe-lum4Un1tmzE_1uaMAHAcxBxN6s> .
@prefix sub: <https://w3id.org/np/RAeCxjIx0rgSY9AdOe-lum4Un1tmzE_1uaMAHAcxBxN6s/> .
@prefix schema: <http://schema.org/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix pav: <http://purl.org/pav/> .
@prefix coxbase: <https://w3id.org/np/RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
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@prefix orcid: <https://orcid.org/> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix dc: <http://purl.org/dc/terms/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23InSilicoGenotyping a schema:DefinedTerm;
    schema:description "Automated genotyping from genomic sequences using computational methods"@en;
    rdfs:label "In Silico Genotyping"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23supportsMethods sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23IS1111Method,
      sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23MLVAMethod, sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23MSTMethod,
      sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23PlasmidTypingMethod, sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23adaAMethod .
  
  sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23InSilicoTypingClaim a schema:Statement;
    schema:about sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23InSilicoGenotyping;
    schema:text "In silico typing can be an indispensable tool for rapid genotyping of Coxiella genomic sequences"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23evidenceFrom sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23ValidationStudy .
  
  sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23SequenceQualityClaim a schema:Statement;
    schema:text "The strength of in silico typing methods relies significantly on the quality of the input sequence"@en;
    sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23evidenceFrom sub:RAnh-o0GrvBfvoyiruq9UnbZOaNcHbue5O-FU6300R_Jg%23ValidationStudy .
}

sub:provenance {
  <https://doi.org/10.1128/mSystems.00403-21> a bibo:AcademicArticle;
    bibo:doi "10.1128/mSystems.00403-21";
    schema:datePublished "2021"^^xsd:gYear;
    schema:name "CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences"@en .
  
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1481-2996, orcid:0000-0002-2498-4951,
      orcid:0000-0002-2864-3820, orcid:0000-0003-0913-194X, orcid:0000-0003-1886-7625, orcid:0000-0003-3012-2626;
    prov:wasDerivedFrom <https://doi.org/10.1128/mSystems.00403-21> .
}

sub:pubinfo {
  orcid:0009-0005-7752-8203 foaf:name "Tiado Kollender" .
  
  this: a npx:ExampleNanopub;
    dc:created "2026-01-11T12:00:00Z"^^xsd:dateTime;
    dc:creator orcid:0009-0005-7752-8203;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:signedBy orcid:0009-0005-7752-8203;
    npx:wasCreatedAt <https://nanodash.knowledgepixels.com/>;
    pav:authoredBy orcid:0009-0005-7752-8203;
    rdfs:comment "Nanopublication describing the utility of in silico genotyping methods for rapid genotyping of Coxiella burnetii genomic sequences, covering MLVA, MST, IS1111, adaA and plasmid typing methods"@en;
    rdfs:label "In Silico Genotyping of Coxiella burnetii" .
  
  sub:sig npx:hasAlgorithm "RSA";
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    npx:hasSignatureTarget this: .
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