@prefix this: <https://w3id.org/np/RAfbQ-nDE34epmaKATWQumrLjceATpVGNQm77-HgQhOt4> .
@prefix sub: <https://w3id.org/np/RAfbQ-nDE34epmaKATWQumrLjceATpVGNQm77-HgQhOt4/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:get-annotated-papers a <https://w3id.org/kpxl/grlc/grlc-query>;
    dct:description "Lists all papers that have been annotated by nanopubs containing oa:Annotation, ordered by the number of annotation nanopubs targeting each paper.";
    dct:license <http://www.apache.org/licenses/LICENSE-2.0>;
    rdfs:label "Get annotated papers";
    <https://w3id.org/kpxl/grlc/endpoint> <https://w3id.org/np/l/nanopub-query-1.1/repo/full>;
    <https://w3id.org/kpxl/grlc/sparql> """prefix np: <http://www.nanopub.org/nschema#>
prefix npa: <http://purl.org/nanopub/admin/>
prefix npx: <http://purl.org/nanopub/x/>
prefix oa: <http://www.w3.org/ns/oa#>

select ?paper (count(?np) as ?annotation_count)
  (group_concat(str(?np); separator=\" \") as ?nps_multi_iri)
  (group_concat(\"^\"; separator=\"\\n\") as ?nps_label_multi)
where {
  {
    select distinct ?paper ?np where {
      graph npa:graph {
        ?np np:hasAssertion ?a .
        ?np npa:hasValidSignatureForPublicKeyHash ?pubkey .
        filter not exists { ?npx npx:invalidates ?np ; npa:hasValidSignatureForPublicKeyHash ?pubkey . }
      }
      graph ?a {
        ?annotation a oa:Annotation ;
          oa:hasTarget ?target .
        ?target oa:hasSource ?paper .
      }
    }
  }
}
group by ?paper
order by desc(?annotation_count)""" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  this: dct:created "2026-04-28T17:25:29Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:embeds sub:get-annotated-papers;
    rdfs:label "Get annotated papers";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw>,
      <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw>, <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB";
    npx:hasSignature "b9A4Q8ylO3x1t/FYcpfOKL67fjTBaFYvvcvOM/VYXE6fgGvWyhAcmPRzGeNTdqNAqpBVoMhkgf8EckAnFARv94JHv24DUrnIy8Itgh3zc9pjJe3vwzoeCNx3lpjP/maaZXLQe/eM/NbQY6kJTztmDLph4S/LKpzjcUQAMtMs7l8=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0002-1267-0234 .
}