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https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/assertion
https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/chla-open-source-westerschelde-replication
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https://w3id.org/sciencelive/o/terms/FORRT-Replication-Study
https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/chla-open-source-westerschelde-replication
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Open-source Sentinel-2 chlorophyll-a retrieval validated against in situ data in the Westerschelde estuary
https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/chla-open-source-westerschelde-replication
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Five deliberate deviations, each recorded rather than hidden:
1. Atmospheric-correction processor. The paper selected C2RCC for its chlorophyll-a
time series (the "cGS" chain, C2RCC + Gons). C2RCC exists only inside ESA SNAP
and crashes natively in the container, so it is excluded; this replication runs
Acolite instead, making the chain "aGS" (Acolite + Gons), an open-source
analogue. Note the original study itself reports Acolite as its worst-performing
processor.
2. Site. Validation is in the Westerschelde estuary, not the Sado, because the Sado
in situ match-up data are available only on request (paper Data Availability
Statement) and no open, contemporaneous, in-estuary substitute exists. The
Westerschelde is a comparable mesotidal, well-mixed, turbid estuary.
3. Period. The record spans January 2016 to July 2026 (the full Sentinel-2 era),
not the original's March 2018 to March 2020 field campaign, to gain the "more
complete set of match-ups" the paper called for.
4. In situ reference. Coincident chlorophyll-a comes from Rijkswaterstaat routine
monitoring stations, not the original AQUASado sampling campaign.
5. Fully open-source chain. Every step (Sentinel-2 L1C, Acolite, the Gons algorithm)
is open and reproducible, whereas the original's selected chain depends on the
proprietary SNAP/C2RCC processor.
https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/chla-open-source-westerschelde-replication
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https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/chla-open-source-westerschelde-replication
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The satellite half of the paper's pipeline is reproduced with a fully open-source
chain (the "aGS" chain) and validated against an independent in situ reference.
Sentinel-2 A/B/C Level-1C granules over the Westerschelde estuary are
atmospherically corrected with Acolite to water-leaving reflectance, clipped to an
estuary bounding box covering the along-axis stations. Chlorophyll-a is retrieved
with the Gons et al. (2005) red-edge three-band algorithm, using the 665, 705 and
783 nm bands, transcribed from the original paper's Table 2; the bands are matched
by nearest wavelength to absorb the Sentinel-2 A/B/C band-centre drift. At each in
situ station a 3x3 pixel window is cut on the native 10 m UTM grid, with per-pixel
quality control (water only, no cloud/shadow/glint, atmospheric-correction success),
and the valid pixels are averaged. Satellite retrievals are paired with coincident
in situ chlorophyll-a from Rijkswaterstaat monitoring stations on station and time
within a plus-or-minus two-hour window. Agreement is scored with the paper's metric
suite (coefficient of determination, slope, intercept, RMSE, bias, unbiased RMS,
absolute and relative percentage difference), with the regression-family metrics
computed in log10 space for chlorophyll-a and the percentage-difference metrics on
untransformed values, exactly as the original specifies. Statistics are reported
both over the full Sentinel-2 record and over the original study's field-campaign
window, to separate the effect of changing the period from the effect of changing
the site.
https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/chla-open-source-westerschelde-replication
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This study tests only the chlorophyll-a limb of the original claim: the assertion
that Sentinel-2 MSI retrieval of chlorophyll-a is the weak side of a parameter-
dependent accuracy — that chlorophyll-a is the parameter for which further research
and a more complete set of match-ups are still needed. In scope is whether an
independent, satellite-derived chlorophyll-a product agrees with coincident in situ
chlorophyll-a measurements in a mesotidal, well-mixed, turbid estuary, and whether
the original study's weak-chlorophyll-a caution still holds when the retrieval chain
is fully open source and transferred to a different estuary and a longer period.
Out of scope, and left to separate atomic chains, are the turbidity, suspended-
particulate-matter and coloured-dissolved-organic-matter limbs of the paper's
asymmetry, the seasonal time-series analysis, and any grid-sensitivity (HEALPix /
DGGS) representation of the corrected fields.
https://w3id.org/sciencelive/np/RAlQ4qJBnhxePAPzuL0Iy1mp4Ks61AAMfQCoP0kZ65ECM/chla-open-source-westerschelde-replication
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2026-07-25T16:23:23.490Z
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Open-source Sentinel-2 chlorophyll-a retrieval validated against in situ data in the Westerschelde estuary
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