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(3) The secondary age-dependent analyses (age-group t-test and multivariable regression) reproduce the paper only after excluding one 40-year-old patient, an exclusion the paper does not report; the primary run uses all rows and the exclusion is reported as a separately labelled sensitivity run. (4) Because R's t.test defaults to Welch while the paper does not state which variant was used, both Student (equal variances) and Welch t-tests are reported for the age-group comparison." } ], "https://w3id.org/sciencelive/o/terms/hasDiscipline": [ { "@id": "http://www.wikidata.org/entity/Q2725393" } ], "https://w3id.org/sciencelive/o/terms/hasMethodologyDescription": [ { "@value": "Computational reproduction on the authors' own published patient-level data (S1 Data, https://doi.org/10.1371/journal.pgph.0001995.s001, 91 rows). No analysis code was published, so the analysis was reconstructed from the paper's methods description in Python (pandas, scipy, statsmodels) and orchestrated with Snakemake as jupytext notebooks: download and checksum S1 Data; tidy it without dropping rows or repairing values (missing values kept; each analysis uses complete cases and reports its n); then re-run every reported test. Headline: paired t-test of discharge versus admission mouth opening. Secondary: independent two-sample t-test of change by age group (0-3 vs >3 years); bivariate one-way ANOVA for categorical factors and simple linear regression for continuous factors; multivariable linear regression of change on number of physiotherapy sessions and age group; proportions below 20 mm at admission and discharge. Each reproduced statistic is compared against the paper's reported value at the paper's precision. Code and results are archived at https://doi.org/10.5281/zenodo.23281226." } ], "https://w3id.org/sciencelive/o/terms/hasScopeDescription": [ { "@value": "The headline claim of Oluwalomola et al. (2023): among the 91 noma patients (WHO stages 3 and 4) who received physiotherapy during initial hospitalization at Noma Children Hospital, Sokoto, mouth opening at discharge was greater than at admission. In scope is the within-patient admission-to-discharge comparison of mouth opening (mean difference, its confidence interval and significance) and the proportions of patients below 20 mm opening at admission and discharge. The paper's secondary analyses (age-group comparison, bivariate and multivariable predictors of change) were also re-run and are reported as context, but are not part of the claim tested. Out of scope: whether physiotherapy causes the change (the study has no comparison group) and generalisation beyond this cohort." } ], "https://w3id.org/sciencelive/o/terms/targetsClaim": [ { "@id": "https://w3id.org/sciencelive/np/RALXE56xitCdQ_bT0aSPq0X2uP_QUsx-HJvmKhvaF7-38" } ] } ] } ]