https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/Head https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/assertion https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/provenance https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/pubinfo https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/assertion https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/get-biochementities-from-space-members http://purl.org/dc/terms/description Like 'Get the classes of an ontology from space members', but links classes to the ontology via dct:isPartOf (the predicate used by the biochementity template). Returns the biochementities (owl:Class) that declare dct:isPartOf the given resource, restricted to nanopubs published by an admin, maintainer, or member of the space that maintains the resource. The maintaining space and its validated member public-key hashes are resolved server-side from the spaces repo (/repo/spaces); observers are excluded. Each class URI appears once, kept from the latest (by nanopub timestamp) member-published definition. Superclass labels are taken from the superclass' own rdfs:label when it is a biochementity in the same ontology. The status column is a multi-value literal listing the curation states that "approved", apply to the winning definition: "deprecated" (owl:DeprecatedClass), "withdrawn" (gen:WithdrawnTerm) and "example" (npx:ExampleNanopub), in that order. It replaces the former types column. A version counts as approved when the newest non-invalidated approval/disapproval nanopublication targeting it is an npx:approvesOf (latest wins across all publishers: a later npx:disapprovesOf neutralises an earlier approval, and a later approval reinstates it), its publisher signed with a key that belongs to a current member+ of the maintaining space, and that publisher is not the signer of the nanopublication being approved (self-approval never counts). The approve_target, disapprove_target and approval_choice columns are action data rather than content: exactly one of the two targets is non-empty per row -- approve_target while the row is unapproved, disapprove_target once it is approved -- so a view can offer a per-row approve/disapprove action whose label follows the current state, and approval_choice carries the matching npx predicate to pre-fill in the approval template. Approval is judged on the winning definition only, so publishing a new version starts it out unapproved. Because approval nanopublications do not carry the owl:Class nanopub type they are absent from the type-scoped endpoint this query runs on, so the set of currently approved class nanopublications is resolved once per request by a self-contained sub-select that federates to /repo/full for the approvals and to /repo/spaces for the approvers' member keys. Note that "withdrawn" can never appear here because withdrawn classes are excluded by the filter below; the branch is kept so the expression matches the one in get-term-version-history and still works if that filter is ever relaxed. Classes whose winning definition types them gen:WithdrawnTerm are withdrawn from the vocabulary and are excluded entirely; withdrawal is judged on the winning definition only, so publishing a new version without that type reinstates the class. The last_modified_by/last_modified columns give the signer and timestamp of that latest definition; the signer name is resolved from the trust repo (/repo/trust) or left blank. https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/get-biochementities-from-space-members http://purl.org/dc/terms/license http://www.apache.org/licenses/LICENSE-2.0 https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/get-biochementities-from-space-members http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/grlc/grlc-query https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/get-biochementities-from-space-members http://www.w3.org/2000/01/rdf-schema#label Get the biochementities of an ontology from space members https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/get-biochementities-from-space-members https://w3id.org/kpxl/grlc/endpoint https://w3id.org/np/l/nanopub-query-1.1/repo/type/e8cc5bb29ec5597303f8f101c65c545dc124ee0df68ce733764b03adc3237184 https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/get-biochementities-from-space-members https://w3id.org/kpxl/grlc/sparql prefix owl: <http://www.w3.org/2002/07/owl#> prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix dct: <http://purl.org/dc/terms/> prefix np: <http://www.nanopub.org/nschema#> prefix npa: <http://purl.org/nanopub/admin/> prefix npx: <http://purl.org/nanopub/x/> prefix skos: <http://www.w3.org/2004/02/skos/core#> prefix gen: <https://w3id.org/kpxl/gen/terms/> prefix foaf: <http://xmlns.com/foaf/0.1/> select ?class ?class_label ?description ?superclasses_multi_iri ?superclasses_label_multi ?status_multi ?last_modified_by (sample(?lmbl) as ?last_modified_by_label) ?last_modified (?np as ?override_target) ?approve_target ?disapprove_target ?approval_choice ?np ?np_label where { { select ?class ?class_label (?definition as ?description) (group_concat(distinct str(?superclass); separator=" ") as ?superclasses_multi_iri) (group_concat(distinct replace(replace(coalesce(?superclass_lbl, str(?superclass)), "\\\\", "\\\\\\\\"), "[\r\n]+", "\\\\n"); separator="\n") as ?superclasses_label_multi) ?status_multi ?approve_target ?disapprove_target ?approval_choice (sample(?user) as ?last_modified_by) (sample(?date) as ?last_modified) ?np ("^" as ?np_label) where { values ?_ontology_multi_iri {} service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> { select (group_concat(?mpk; separator=" ") as ?memberPubkeys) where { graph npa:graph { npa:thisRepo npa:hasCurrentSpaceState ?stateG . } values ?_ontology_multi_iri {} graph ?stateG { ?_ontology_multi_iri npa:isMaintainedBy? ?space . ?ri a gen:RoleInstantiation ; npa:forSpace ?space ; npa:forAgent ?agent ; npa:hasRoleType ?rt . filter(?rt in (gen:AdminRole, gen:MaintainerRole, gen:MemberRole)) ?acct a npa:AccountState ; npa:agent ?agent ; npa:pubkey ?mpk . } } } graph npa:graph { ?np npx:hasNanopubType owl:Class . ?np npa:hasValidSignatureForPublicKeyHash ?pubkey . filter not exists { ?npx npx:invalidates ?np ; npa:hasValidSignatureForPublicKeyHash ?pubkey . } ?np dct:created ?date . ?np npx:introduces ?class . ?np np:hasAssertion ?a . optional { ?np npx:signedBy ?user . } } filter(contains(?memberPubkeys, ?pubkey)) { select (group_concat(distinct str(?apTarget); separator=" ") as ?approvedNps) where { values ?_ontology_multi_iri {} service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> { select (group_concat(?apk; separator=" ") as ?apMemberPubkeys) where { graph npa:graph { npa:thisRepo npa:hasCurrentSpaceState ?apStateG . } values ?_ontology_multi_iri {} graph ?apStateG { ?_ontology_multi_iri npa:isMaintainedBy? ?apSpace . ?apRi a gen:RoleInstantiation ; npa:forSpace ?apSpace ; npa:forAgent ?apMember ; npa:hasRoleType ?apRt . filter(?apRt in (gen:AdminRole, gen:MaintainerRole, gen:MemberRole)) ?apAcct a npa:AccountState ; npa:agent ?apMember ; npa:pubkey ?apk . } } } service <https://w3id.org/np/l/nanopub-query-1.1/repo/full> { select distinct ?apTarget ?apPubkey where { graph npa:graph { ?apTarget npx:hasNanopubType owl:Class ; npx:signedBy ?targetAgent . ?apNp npx:signedBy ?apAgent ; npa:hasValidSignatureForPublicKeyHash ?apPubkey ; dct:created ?apDate ; np:hasAssertion ?apA . filter not exists { ?apInv npx:invalidates ?apNp ; npa:hasValidSignatureForPublicKeyHash ?apPubkey . } } graph ?apA { ?apAgent npx:approvesOf ?apTarget . } filter(?apAgent != ?targetAgent) filter not exists { graph npa:graph { ?dNp npx:signedBy ?dAgent ; npa:hasValidSignatureForPublicKeyHash ?dPubkey ; dct:created ?dDate ; np:hasAssertion ?dA . filter not exists { ?dInv npx:invalidates ?dNp ; npa:hasValidSignatureForPublicKeyHash ?dPubkey . } } graph ?dA { ?dAgent npx:disapprovesOf ?apTarget . } filter(?dAgent != ?targetAgent) filter(?dDate > ?apDate || (?dDate = ?apDate && str(?dNp) > str(?apNp))) } } } filter(contains(?apMemberPubkeys, ?apPubkey)) } } graph ?a { ?class dct:isPartOf ?_ontology_multi_iri . optional { ?class rdfs:label ?class_label . filter(lang(?class_label) = "") } optional { ?class skos:definition ?definition . } optional { ?class rdfs:subClassOf ?superclass . filter(isIRI(?superclass)) } } filter not exists { graph ?a { ?class a gen:WithdrawnTerm } } bind(coalesce(?user, <http://purl.org/nanopub/temp/none>) as ?userSafe) bind(contains(concat(" ", ?approvedNps, " "), concat(" ", str(?np), " ")) as ?isApproved) bind(if(?isApproved, "", str(?np)) as ?approve_target) bind(if(?isApproved, str(?np), "") as ?disapprove_target) bind(if(?isApproved, str(npx:disapprovesOf), str(npx:approvesOf)) as ?approval_choice) bind(replace(concat( if(?isApproved, "approved\n", ""), if(exists { graph ?a { ?class a owl:DeprecatedClass } }, "deprecated\n", ""), if(exists { graph ?a { ?class a gen:WithdrawnTerm } }, "withdrawn\n", ""), if(exists { graph npa:graph { ?np npx:hasNanopubType npx:ExampleNanopub } }, "example\n", "") ), "\n$", "") as ?status_multi) filter not exists { graph npa:graph { ?np2 npx:hasNanopubType owl:Class . ?np2 npa:hasValidSignatureForPublicKeyHash ?pubkey2 . filter not exists { ?np2x npx:invalidates ?np2 ; npa:hasValidSignatureForPublicKeyHash ?pubkey2 . } ?np2 dct:created ?date2 . ?np2 npx:introduces ?class . ?np2 np:hasAssertion ?a2 . } filter(contains(?memberPubkeys, ?pubkey2)) graph ?a2 { ?class dct:isPartOf ?_ontology_multi_iri . } filter(?date2 > ?date || (?date2 = ?date && str(?np2) > str(?np))) } optional { select ?superclass (sample(?sclbl) as ?superclass_lbl) where { values ?_ontology_multi_iri {} graph npa:graph { ?scnp npx:hasNanopubType owl:Class ; npx:introduces ?superclass ; np:hasAssertion ?sca . } graph ?sca { ?superclass dct:isPartOf ?_ontology_multi_iri ; rdfs:label ?sclbl . } } group by ?superclass } } group by ?class ?class_label ?definition ?status_multi ?approve_target ?disapprove_target ?approval_choice ?np } optional { service <https://w3id.org/np/l/nanopub-query-1.1/repo/trust> { select ?last_modified_by ?lmbl where { graph npa:graph { npa:thisRepo npa:hasCurrentTrustState ?tg . } graph ?tg { ?last_modified_by foaf:name ?lmbl . } } } } } group by ?class ?class_label ?description ?superclasses_multi_iri ?superclasses_label_multi ?status_multi ?last_modified_by ?last_modified ?approve_target ?disapprove_target ?approval_choice ?np ?np_label order by ?class_label https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/provenance https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/assertion http://www.w3.org/ns/prov#wasAttributedTo https://orcid.org/0000-0002-1267-0234 https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/pubinfo https://orcid.org/0000-0002-1267-0234 http://xmlns.com/foaf/0.1/name Tobias Kuhn https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://purl.org/dc/terms/created 2026-08-12T06:58:17Z https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://purl.org/dc/terms/creator https://orcid.org/0000-0002-1267-0234 https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://purl.org/nanopub/x/embeds https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/get-biochementities-from-space-members https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://purl.org/nanopub/x/supersedes https://w3id.org/np/RAHN2aSyRwWJmzV3BZtteVk5bT2ows1xFuR1F5MAC8Iwc https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c http://www.w3.org/2000/01/rdf-schema#label Get the biochementities of an ontology from space members https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8 https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/sig http://purl.org/nanopub/x/hasAlgorithm RSA https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/sig http://purl.org/nanopub/x/hasPublicKey MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/sig http://purl.org/nanopub/x/hasSignature AkjgMYpgvfAk1Z6/DpOvcBsuicHyoLNX+XNqGGkIG57lsitMi8TncDqHJoiUDEdjgCaXS5uvZUzEqm9qzGwlvVzZGFbXCiRpkLrh1ZtbOj+jVHBi2wbq5PJXmyE7i8r/6FTvIX8sPeuQWBZH3/rGDKReCXyb4awCteGJtKT+5cI= https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/sig http://purl.org/nanopub/x/hasSignatureTarget https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c https://w3id.org/np/RAyPwuo3lQ0wzSQaYHf30hkeI5BzKljRxp9hHJqsl9p9c/sig http://purl.org/nanopub/x/signedBy https://orcid.org/0000-0002-1267-0234